David Posada

Bioinformatics for DNA Sequence Analysis - Methods in Molecular Biology David Posada 2009 edition

Marc Notes: Includes bibliographical references and indexes. Table of Contents: Preface -- Contributors -- 1. Similarity Searching Using BLAST / Kit J. Menlove, Mark Clement, Keith A. Crandall -- 2. Gene Orthology Assessment with OrthologID / Mary Egan, Ernest K. Lee, Joanna C. Chiu, Gloria Coruzzi, Rob DeSalle -- 3. Multiple Alignment of DNA Sequences with MAFFT / Kazutaka Katoh, George Asimenos, Hiroyuki Toh -- 4. SeqVis: A Tool for Detecting Compositional Heterogeneity Among Aligned Nucleotide Sequences / Lars Sommer Jermiin, Joshua Wing Kei Ho, Kwok Wai Lau, Vivek Jayaswal -- 5. Selection of Models of DNA Evolution with jModel Test / David Posada -- 6. Estimating Maximum Likelihood Phylogenies with PhyML / Stephane Guindon, Frederic Delsuc, Jean-Francois Dufayard, Olivier Gascuel -- 7. Trees from Trees: Construction of Phylogenetic Supertrees Using Clann / Christopher J. Creevey, James O. McInerney -- 8. Detecting Signatures of Selection from DNA Sequences Using Datamonkey / Art F. Y. Poon, Simon D. W. Frost, Sergei L. Kosakovsky Pond -- 9. Recombination Detection and Analysis Using RDP3 / Darren P. Martin -- 10. CodonExplorer: An Interactive Online Database for the Analysis of Codon Usage and Sequence Composition / Jesse Zaneveld, Micah Hamady, Noboru Sueoka, Rob Knight -- 11. Genetic Code Prediction for Metazoan Mitochondria with GenDecoder / Federico Abascal, Rafael Zardoya, David Posada -- 12. Computational Gene Annotation in New Genome Assemblies Using GeneID / Enrique Blanco, Josep F. Abril -- 13. Promoter Analysis: Gene Regulatory Motif Identification with A-GLAM / Leonardo Marino-Ramirez, Kannan Tharakaraman, John L. Spouge, David Landsman -- 14. Analysis of Genomic DNA with the UCSC Genome Browser / Jonathan Pevsner -- 15. Mining for SNPs and SSRs Using SNPServer, dbSNP and SSR Taxonomy Tree / Jacqueline Batley, David Edwards -- 16. Analysis of Transposable Element Sequences Using Censor and RepeatMasker / Ahsan Huda, I. King Jordan -- 17. DNA Sequence Polymorphism Analysis Using DnaSP / Julio Rozas -- Index. Jacket Description/Back: The storage, processing, description, transmission, connection, and analysis of the waves of new genomic data have made bioinformatics skills essential for scientists working with DNA sequences. In Bioinformatics for DNA Sequence Analysis, experts in the field provide practical guidance and troubleshooting advice for the computational analysis of DNA sequences, covering a range of issues and methods that unveil the multitude of applications and the vital relevance that the use of bioinformatics has today. Individual book chapters explore the use of specific bioinformatic tools, accompanied by practical examples, a discussion on the interpretation of results, and specific comments on strengths and limitations of the methods and tools. As a part of the highly successful Methods in Molecular Biology series, this work provides the kind of detailed description and implementation advice that is crucial for getting optimal results. Focused and cutting-edge, Bioinformatics for DNA Sequence Analysis serves molecular biologists, geneticists, and biochemists as an enriched task-oriented manual, offering step-by-step guidance for the analysis of DNA sequences in a simple but meaningful fashion. "Publisher Marketing: Brings together biological data and computational and/or mathematical models of the data to aid researchers striving to create a system that provides both predictive and mechanistic information for a model organism. This title is part of the Methods in Molecular Biology series. Review Citations:

Scitech Book News 09/01/2009 pg. 66 (EAN 9781588299109, Hardcover)